pyNAVIS.dataset_gen

DatasetGenerators

class pyNAVIS.dataset_gen.DatasetGenerators[source]

Methods:

`generate_histogram_dataset`(...[, ...])	Automatically generates and saves histograms in CSV format from a set of AEDAT files.
`generate_phaselock_dataset`(...[, ...])	Automatically generates and saves phaselocked AEDAT files from a set of AEDAT files.
`generate_sonogram_dataset`(path_input_folder, ...)	Automatically generates and saves sonograms from a set of AEDAT files.

static generate_histogram_dataset(path_input_folder, path_output_folder, settings, allow_subdirectories=False, verbose=False)[source]

Automatically generates and saves histograms in CSV format from a set of AEDAT files.

Parameters:

path_input_folder (string) – Path of the folder where AEDAT files are.
path_output_folder (string) – Path of the folder where CSV files with the histogram information will be saved.
settings (MainSettings) – Configuration parameters of the files in the path_input_folder.
allow_subdirectories (boolean, optional) – Allow the function to navigate deeper in the path_input_folder folder structure to look for input files.
verbose (boolean, optional) – Set to True if you want the execution time of the function to be printed.

Returns:

None.

static generate_phaselock_dataset(path_input_folder, path_output_folder, settings, allow_subdirectories=False, verbose=False)[source]

Automatically generates and saves phaselocked AEDAT files from a set of AEDAT files.

Parameters:

path_input_folder (string) – Path of the folder where AEDAT files are.
path_output_folder (string) – Path of the folder where phaselocked AEDAT files will be saved.
settings (MainSettings) – Configuration parameters of the files in the path_input_folder.
allow_subdirectories (boolean, optional) – Allow the function to navigate deeper in the path_input_folder folder structure to look for input files.
verbose (boolean, optional) – Set to True if you want the execution time of the function to be printed.

Returns:

None.

static generate_sonogram_dataset(path_input_folder, path_output_folder, settings, allow_subdirectories=False, verbose=False)[source]

Automatically generates and saves sonograms from a set of AEDAT files.

Parameters:

path_input_folder (string) – Path of the folder where AEDAT files are.
path_output_folder (string) – Path of the folder where sonogram images will be saved.
settings (MainSettings) – Configuration parameters of the files in the path_input_folder.
allow_subdirectories (boolean, optional) – Allow the function to navigate deeper in the path_input_folder folder structure to look for input files.
verbose (boolean, optional) – Set to True if you want the execution time of the function to be printed.

Returns:

None.